J3_9Y79_013

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

9Y79|1|D|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y79_013 not in the Motif Atlas

Geometric match to J3_9PN5_040

Geometric discrepancy: 0.3873

The information below is about J3_9PN5_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.6

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

4

Unit IDs

9Y79|1|D|U|1073
9Y79|1|D|G|1074
*
9Y79|1|D|U|1083
9Y79|1|D|G|1084
9Y79|1|D|U|1085
9Y79|1|D|U|1086
9Y79|1|D|G|1087
*
9Y79|1|D|C|1098
9Y79|1|D|G|1099
9Y79|1|D|C|1100
9Y79|1|D|A|1101
9Y79|1|D|A|1102

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein bS21

Chain G

30S ribosomal protein S2

Chain K

Small ribosomal subunit protein uS5