J3_9Y79_031

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9Y79|1|a|A|2518, 9Y79|1|a|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y79_031 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1818

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9Y79|1|a|C|2517
9Y79|1|a|A|2518
9Y79|1|a|U|2519
9Y79|1|a|C|2520
*
9Y79|1|a|G|2545
9Y79|1|a|U|2546
9Y79|1|a|A|2547
*
9Y79|1|a|U|2561
9Y79|1|a|U|2562
9Y79|1|a|U|2563
9Y79|1|a|A|2564
9Y79|1|a|A|2565
9Y79|1|a|A|2566
9Y79|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

Large ribosomal subunit protein uL14