J4_1J5A_004

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1J5A_004 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1402

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

1J5A|1|A|G|1763
1J5A|1|A|A|1764
1J5A|1|A|C|1765
1J5A|1|A|U|1766
1J5A|1|A|G|1767
*
1J5A|1|A|C|1779
1J5A|1|A|A|1780
1J5A|1|A|C|1781
1J5A|1|A|A|1782
1J5A|1|A|G|1783
*
1J5A|1|A|U|1819
1J5A|1|A|G|1820
1J5A|1|A|A|1821
1J5A|1|A|C|1822
*
1J5A|1|A|G|1958
1J5A|1|A|U|1959
1J5A|1|A|A|1960
1J5A|1|A|A|1961
1J5A|1|A|C|1962

Current chains

Chain A

23S RRNA

Nearby chains