J4_1J5A_008

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

1J5A|1|A|A|2265, 1J5A|1|A|A|2267, 1J5A|1|A|U|2323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1J5A_008 not in the Motif Atlas

Homologous match to J4_7A0S_009

Geometric discrepancy: 0.2808

The information below is about J4_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

1J5A|1|A|C|2264
1J5A|1|A|A|2265
1J5A|1|A|A|2266
1J5A|1|A|A|2267
1J5A|1|A|G|2268
*
1J5A|1|A|U|2322
1J5A|1|A|U|2323
1J5A|1|A|G|2324
1J5A|1|A|A|2325
1J5A|1|A|C|2326
*
1J5A|1|A|G|2349
1J5A|1|A|G|2350
1J5A|1|A|G|2351
*
1J5A|1|A|C|2360
1J5A|1|A|G|2361
1J5A|1|A|G|2362

Current chains

Chain A

23S RRNA

Nearby chains