J4_1VX6_003

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAACUAU*AG*UAAAU*AG

Length

16 nucleotides

Bulged bases

1VX6|1|A|A|1601, 1VX6|1|A|U|1604, 1VX6|1|A|A|2147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|C|1600
1VX6|1|A|A|1601
1VX6|1|A|A|1602
1VX6|1|A|C|1603
1VX6|1|A|U|1604
1VX6|1|A|A|1605
1VX6|1|A|U|1606
*
1VX6|1|A|A|1624
1VX6|1|A|G|1625
*
1VX6|1|A|U|2144
1VX6|1|A|A|2145
1VX6|1|A|A|2146
1VX6|1|A|A|2147
1VX6|1|A|U|2148
*
1VX6|1|A|A|2645
1VX6|1|A|G|2646

Current chains

Chain A

28S ribosomal RNA

Nearby chains