J4_1VX6_004

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUUU*AGUUAG*CC*GAGCGUAC

Length

21 nucleotides

Bulged bases

1VX6|1|A|U|1672

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|G|1641
1VX6|1|A|G|1642
1VX6|1|A|U|1643
1VX6|1|A|U|1644
1VX6|1|A|U|1645
*
1VX6|1|A|A|1669
1VX6|1|A|G|1670
1VX6|1|A|U|1671
1VX6|1|A|U|1672
1VX6|1|A|A|1673
1VX6|1|A|G|1674
*
1VX6|1|A|C|1757
1VX6|1|A|C|1758
*
1VX6|1|A|G|2096
1VX6|1|A|A|2097
1VX6|1|A|G|2098
1VX6|1|A|C|2099
1VX6|1|A|G|2100
1VX6|1|A|U|2101
1VX6|1|A|A|2102
1VX6|1|A|C|2103

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA