J4_1VX6_004
3D structure
- PDB id
- 1VX6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUUU*AGUUAG*CC*GAGCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 1VX6|1|A|U|1672
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1VX6_004 not in the Motif Atlas
- Homologous match to J4_9PN5_004
- Geometric discrepancy: 0.0929
- The information below is about J4_9PN5_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_17758.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
1VX6|1|A|G|1641
1VX6|1|A|G|1642
1VX6|1|A|U|1643
1VX6|1|A|U|1644
1VX6|1|A|U|1645
*
1VX6|1|A|A|1669
1VX6|1|A|G|1670
1VX6|1|A|U|1671
1VX6|1|A|U|1672
1VX6|1|A|A|1673
1VX6|1|A|G|1674
*
1VX6|1|A|C|1757
1VX6|1|A|C|1758
*
1VX6|1|A|G|2096
1VX6|1|A|A|2097
1VX6|1|A|G|2098
1VX6|1|A|C|2099
1VX6|1|A|G|2100
1VX6|1|A|U|2101
1VX6|1|A|A|2102
1VX6|1|A|C|2103
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: