J4_1VX6_008

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAG*UUGAU*AAC*GUG

Length

16 nucleotides

Bulged bases

1VX6|1|A|A|2996

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|C|2993
1VX6|1|A|A|2994
1VX6|1|A|A|2995
1VX6|1|A|A|2996
1VX6|1|A|G|2997
*
1VX6|1|A|U|3051
1VX6|1|A|U|3052
1VX6|1|A|G|3053
1VX6|1|A|A|3054
1VX6|1|A|U|3055
*
1VX6|1|A|A|3079
1VX6|1|A|A|3080
1VX6|1|A|C|3081
*
1VX6|1|A|G|3090
1VX6|1|A|U|3091
1VX6|1|A|G|3092

Current chains

Chain A

28S ribosomal RNA

Nearby chains