J4_1YJW_001

3D structure

PDB id

1YJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1YJW|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1YJW_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0352

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

1YJW|1|0|C|239
1YJW|1|0|C|240
*
1YJW|1|0|G|379
1YJW|1|0|A|380
1YJW|1|0|G|381
1YJW|1|0|U|382
1YJW|1|0|A|383
1YJW|1|0|G|384
*
1YJW|1|0|C|405
1YJW|1|0|G|406
1YJW|1|0|A|407
1YJW|1|0|A|408
1YJW|1|0|U|409
1YJW|1|0|A|410
1YJW|1|0|A|411
1YJW|1|0|C|412
*
1YJW|1|0|G|428
1YJW|1|0|A|429
1YJW|1|0|A|430
1YJW|1|0|G|431

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain M

50S RIBOSOMAL PROTEIN L15E