J4_1YJW_007

3D structure

PDB id

1YJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1YJW_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0268

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

1YJW|1|0|G|1828
1YJW|1|0|A|1829
1YJW|1|0|C|1830
1YJW|1|0|U|1831
1YJW|1|0|G|1832
*
1YJW|1|0|C|1844
1YJW|1|0|A|1845
1YJW|1|0|U|1846
1YJW|1|0|A|1847
1YJW|1|0|G|1848
*
1YJW|1|0|U|1883
1YJW|1|0|G|1884
1YJW|1|0|A|1885
1YJW|1|0|A|1886
1YJW|1|0|U|1887
*
1YJW|1|0|A|2015
1YJW|1|0|U|2016
1YJW|1|0|U|2017
1YJW|1|0|A|2018
1YJW|1|0|A|2019
1YJW|1|0|C|2020

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2P

Chain Z

50S RIBOSOMAL PROTEIN L37AE