J4_23WI_001
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 23WI|1|5|G|1271, 23WI|1|5|A|1272, 23WI|1|5|U|1273, 23WI|1|5|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_23WI_001 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.1321
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_19484.1
- Basepair signature
- cWW-F-cWW-F-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
23WI|1|5|C|1270
23WI|1|5|G|1271
23WI|1|5|A|1272
23WI|1|5|U|1273
23WI|1|5|A|1274
23WI|1|5|A|1275
23WI|1|5|A|1276
*
23WI|1|5|U|1294
23WI|1|5|C|1295
*
23WI|1|5|G|1645
23WI|1|5|C|1646
23WI|1|5|U|1647
23WI|1|5|U|1648
*
23WI|1|5|A|2009
23WI|1|5|G|2010
Current chains
- Chain 5
- RNA (2014-MER)
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain N
- Large ribosomal subunit protein bL17
- Chain S
- 50S ribosomal protein L22
Coloring options: