J4_23WI_007
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 23WI|1|5|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_23WI_007 not in the Motif Atlas
- Homologous match to J4_7A0S_009
- Geometric discrepancy: 0.3075
- The information below is about J4_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
23WI|1|5|C|2285
23WI|1|5|G|2286
23WI|1|5|A|2287
23WI|1|5|A|2288
23WI|1|5|G|2289
*
23WI|1|5|U|2343
23WI|1|5|U|2344
23WI|1|5|G|2345
23WI|1|5|A|2346
23WI|1|5|C|2347
*
23WI|1|5|G|2370
23WI|1|5|G|2371
23WI|1|5|U|2372
*
23WI|1|5|A|2381
23WI|1|5|G|2382
23WI|1|5|G|2383
Current chains
- Chain 5
- RNA (2014-MER)
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
Coloring options: