J4_23WI_013
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 23WI|1|a|C|576, 23WI|1|a|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_23WI_013 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.1158
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
23WI|1|a|G|575
23WI|1|a|C|576
23WI|1|a|G|577
*
23WI|1|a|C|764
23WI|1|a|G|765
23WI|1|a|A|766
23WI|1|a|A|767
23WI|1|a|A|768
23WI|1|a|G|769
*
23WI|1|a|C|810
23WI|1|a|C|811
23WI|1|a|G|812
23WI|1|a|U|813
23WI|1|a|A|814
23WI|1|a|A|815
23WI|1|a|A|816
23WI|1|a|C|817
23WI|1|a|G|818
23WI|1|a|A|819
23WI|1|a|U|820
23WI|1|a|G|821
*
23WI|1|a|C|879
23WI|1|a|C|880
Current chains
- Chain a
- RNA (1539-MER)
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain h
- Small ribosomal subunit protein uS8
- Chain l
- Small ribosomal subunit protein uS12
- Chain o
- Small ribosomal subunit protein uS15
- Chain q
- Small ribosomal subunit protein uS17
- Chain u
- Small ribosomal subunit protein bS21
Coloring options: