J4_2AAR_007

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2AAR_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0956

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

2AAR|1|0|G|1763
2AAR|1|0|A|1764
2AAR|1|0|C|1765
2AAR|1|0|U|1766
2AAR|1|0|G|1767
*
2AAR|1|0|C|1779
2AAR|1|0|A|1780
2AAR|1|0|C|1781
2AAR|1|0|A|1782
2AAR|1|0|G|1783
*
2AAR|1|0|U|1819
2AAR|1|0|G|1820
2AAR|1|0|A|1821
2AAR|1|0|C|1822
*
2AAR|1|0|G|1958
2AAR|1|0|U|1959
2AAR|1|0|A|1960
2AAR|1|0|A|1961
2AAR|1|0|C|1962

Current chains

Chain 0

23S ribosomal RNA

Nearby chains