J4_2AAR_011

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

2AAR|1|0|A|2265, 2AAR|1|0|A|2267, 2AAR|1|0|G|2324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2AAR_011 not in the Motif Atlas

Homologous match to J4_7A0S_009

Geometric discrepancy: 0.3415

The information below is about J4_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

2AAR|1|0|C|2264
2AAR|1|0|A|2265
2AAR|1|0|A|2266
2AAR|1|0|A|2267
2AAR|1|0|G|2268
*
2AAR|1|0|U|2322
2AAR|1|0|U|2323
2AAR|1|0|G|2324
2AAR|1|0|A|2325
2AAR|1|0|C|2326
*
2AAR|1|0|G|2349
2AAR|1|0|G|2350
2AAR|1|0|G|2351
*
2AAR|1|0|C|2360
2AAR|1|0|G|2361
2AAR|1|0|G|2362

Current chains

Chain 0

23S ribosomal RNA

Nearby chains