J4_2J28_008

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2J28_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0629

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

2J28|1|B|A|1772
2J28|1|B|A|1773
2J28|1|B|C|1774
2J28|1|B|U|1775
2J28|1|B|G|1776
*
2J28|1|B|C|1788
2J28|1|B|A|1789
2J28|1|B|C|1790
2J28|1|B|A|1791
2J28|1|B|G|1792
*
2J28|1|B|U|1827
2J28|1|B|G|1828
2J28|1|B|A|1829
2J28|1|B|C|1830
*
2J28|1|B|G|1975
2J28|1|B|U|1976
2J28|1|B|A|1977
2J28|1|B|A|1978
2J28|1|B|U|1979

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2