J4_2J28_010

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

2J28|1|B|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2J28_010 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1213

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

2J28|1|B|C|2285
2J28|1|B|G|2286
2J28|1|B|A|2287
2J28|1|B|A|2288
2J28|1|B|G|2289
*
2J28|1|B|U|2343
2J28|1|B|U|2344
2J28|1|B|G|2345
2J28|1|B|A|2346
2J28|1|B|C|2347
*
2J28|1|B|G|2370
2J28|1|B|G|2371
2J28|1|B|U|2372
*
2J28|1|B|A|2381
2J28|1|B|G|2382
2J28|1|B|G|2383

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L33

Chain 3

50S RIBOSOMAL PROTEIN L35

Chain O

50S RIBOSOMAL PROTEIN L18

Chain W

50S RIBOSOMAL PROTEIN L27