J4_2OGO_007

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

2OGO|1|0|A|2265, 2OGO|1|0|A|2267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2OGO_007 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.3138

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

2OGO|1|0|C|2264
2OGO|1|0|A|2265
2OGO|1|0|A|2266
2OGO|1|0|A|2267
2OGO|1|0|G|2268
*
2OGO|1|0|U|2322
2OGO|1|0|U|2323
2OGO|1|0|G|2324
2OGO|1|0|A|2325
2OGO|1|0|C|2326
*
2OGO|1|0|G|2349
2OGO|1|0|G|2350
2OGO|1|0|G|2351
*
2OGO|1|0|C|2360
2OGO|1|0|G|2361
2OGO|1|0|G|2362

Current chains

Chain 0

23S ribosomal RNA

Nearby chains