J4_2ZXU_003
3D structure
- PDB id
- 2ZXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 2ZXU|1|D|U|8, 2ZXU|1|D|U|45, 2ZXU|1|D|U|47, 2ZXU|1|D|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_2ZXU_003 not in the Motif Atlas
- Homologous match to J4_4YCO_001
- Geometric discrepancy: 0.2966
- The information below is about J4_4YCO_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_36296.3
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
2ZXU|1|D|A|7
2ZXU|1|D|U|8
2ZXU|1|D|A|9
2ZXU|1|D|G|10
*
2ZXU|1|D|C|25
2ZXU|1|D|A|26
2ZXU|1|D|G|27
*
2ZXU|1|D|C|43
2ZXU|1|D|G|44
2ZXU|1|D|U|45
2ZXU|1|D|G|46
2ZXU|1|D|U|47
2ZXU|1|D|C|48
2ZXU|1|D|C|49
*
2ZXU|1|D|G|65
2ZXU|1|D|U|66
Current chains
- Chain D
- tRNA(Phe)
Nearby chains
- Chain A
- tRNA delta(2)-isopentenylpyrophosphate transferase
- Chain B
- tRNA delta(2)-isopentenylpyrophosphate transferase
Coloring options: