J4_3J6Y_011
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UAA*UC*GCU*AUG
- Length
- 11 nucleotides
- Bulged bases
- 3J6Y|1|2S|A|3011
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J6Y_011 not in the Motif Atlas
- Homologous match to J4_8P9A_020
- Geometric discrepancy: 0.1809
- The information below is about J4_8P9A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_65356.1
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|2S|U|3010
3J6Y|1|2S|A|3011
3J6Y|1|2S|A|3012
*
3J6Y|1|2S|U|3042
3J6Y|1|2S|C|3043
*
3J6Y|1|2S|G|3098
3J6Y|1|2S|C|3099
3J6Y|1|2S|U|3100
*
3J6Y|1|2S|A|3134
3J6Y|1|2S|U|3135
3J6Y|1|2S|G|3136
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 56
- 60S ribosomal protein L16
- Chain 63
- 60S ribosomal protein L23
- Chain L3
- 60S ribosomal protein L3
Coloring options: