J4_3J77_011
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 3J77|1|2S|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J77_011 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.2232
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J77|1|2S|C|2654
3J77|1|2S|U|2655
3J77|1|2S|A|2656
3J77|1|2S|A|2657
3J77|1|2S|G|2658
*
3J77|1|2S|U|2712
3J77|1|2S|U|2713
3J77|1|2S|G|2714
3J77|1|2S|A|2715
3J77|1|2S|U|2716
*
3J77|1|2S|A|2740
3J77|1|2S|C|2741
3J77|1|2S|C|2742
*
3J77|1|2S|G|2751
3J77|1|2S|U|2752
3J77|1|2S|G|2753
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 71
- 60S ribosomal protein L21
- Chain 79
- 60S ribosomal protein L29
- Chain 92
- 60S ribosomal protein L42
- Chain L5
- 60S ribosomal protein L5
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