3D structure

PDB id
3J77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.2 Å

Loop

Sequence
CUAAG*UUGAU*ACC*GUG
Length
16 nucleotides
Bulged bases
3J77|1|2S|A|2657
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_3J77_011 not in the Motif Atlas
Homologous match to J4_8P9A_019
Geometric discrepancy: 0.2232
The information below is about J4_8P9A_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

3J77|1|2S|C|2654
3J77|1|2S|U|2655
3J77|1|2S|A|2656
3J77|1|2S|A|2657
3J77|1|2S|G|2658
*
3J77|1|2S|U|2712
3J77|1|2S|U|2713
3J77|1|2S|G|2714
3J77|1|2S|A|2715
3J77|1|2S|U|2716
*
3J77|1|2S|A|2740
3J77|1|2S|C|2741
3J77|1|2S|C|2742
*
3J77|1|2S|G|2751
3J77|1|2S|U|2752
3J77|1|2S|G|2753

Current chains

Chain 2S
25S ribosomal RNA

Nearby chains

Chain 71
60S ribosomal protein L21
Chain 79
60S ribosomal protein L29
Chain 92
60S ribosomal protein L42
Chain L5
60S ribosomal protein L5

Coloring options:


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