J4_3J78_001
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 3J78|1|1S|A|359
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J78_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.209
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J78|1|1S|C|99
3J78|1|1S|A|100
3J78|1|1S|U|101
3J78|1|1S|U|102
3J78|1|1S|A|103
3J78|1|1S|A|104
3J78|1|1S|A|105
3J78|1|1S|U|106
3J78|1|1S|C|107
*
3J78|1|1S|G|307
3J78|1|1S|C|308
3J78|1|1S|C|309
*
3J78|1|1S|G|357
3J78|1|1S|U|358
3J78|1|1S|A|359
3J78|1|1S|A|360
3J78|1|1S|C|361
*
3J78|1|1S|G|383
3J78|1|1S|G|384
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
- Chain 23
- 40S ribosomal protein S23
- Chain S4
- 40S ribosomal protein S4
- Chain S8
- 40S ribosomal protein S8
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