J4_3J78_003
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 3J78|1|2S|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J78_003 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1872
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J78|1|2S|U|112
3J78|1|2S|C|113
*
3J78|1|2S|G|267
3J78|1|2S|A|268
3J78|1|2S|G|269
3J78|1|2S|U|270
3J78|1|2S|C|271
3J78|1|2S|G|272
*
3J78|1|2S|C|293
3J78|1|2S|U|294
3J78|1|2S|A|295
3J78|1|2S|A|296
3J78|1|2S|G|297
3J78|1|2S|U|298
3J78|1|2S|G|299
*
3J78|1|2S|U|316
3J78|1|2S|A|317
3J78|1|2S|A|318
3J78|1|2S|A|319
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 63
- 60S ribosomal protein L13
- Chain 65
- 60S ribosomal protein L15
- Chain 85
- 60S ribosomal protein L35
- Chain 86
- 60S ribosomal protein L36
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