J4_3J8G_013

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

3J8G|1|B|G|1271, 3J8G|1|B|A|1272, 3J8G|1|B|U|1273, 3J8G|1|B|U|1647

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J8G_013 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.2552

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

3J8G|1|B|C|1270
3J8G|1|B|G|1271
3J8G|1|B|A|1272
3J8G|1|B|U|1273
3J8G|1|B|A|1274
3J8G|1|B|A|1275
3J8G|1|B|A|1276
*
3J8G|1|B|U|1294
3J8G|1|B|C|1295
*
3J8G|1|B|G|1645
3J8G|1|B|C|1646
3J8G|1|B|U|1647
3J8G|1|B|U|1648
*
3J8G|1|B|A|2009
3J8G|1|B|G|2010

Current chains

Chain B

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22