J4_3J9W_003
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 3J9W|1|AA|A|824
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J9W_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.1051
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
3J9W|1|AA|G|584
3J9W|1|AA|G|585
3J9W|1|AA|G|586
*
3J9W|1|AA|C|773
3J9W|1|AA|G|774
3J9W|1|AA|A|775
3J9W|1|AA|A|776
3J9W|1|AA|A|777
3J9W|1|AA|G|778
*
3J9W|1|AA|C|819
3J9W|1|AA|C|820
3J9W|1|AA|G|821
3J9W|1|AA|U|822
3J9W|1|AA|A|823
3J9W|1|AA|A|824
3J9W|1|AA|A|825
3J9W|1|AA|C|826
3J9W|1|AA|G|827
3J9W|1|AA|A|828
3J9W|1|AA|U|829
3J9W|1|AA|G|830
*
3J9W|1|AA|C|889
3J9W|1|AA|C|890
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AH
- 30S ribosomal protein uS8
- Chain AL
- 30S ribosomal protein uS12
- Chain AO
- 30S ribosomal protein uS15
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: