J4_3J9W_005

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

3J9W|1|BA|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9W_005 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1667

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

3J9W|1|BA|C|271
3J9W|1|BA|C|272
*
3J9W|1|BA|G|417
3J9W|1|BA|A|418
3J9W|1|BA|G|419
3J9W|1|BA|U|420
3J9W|1|BA|A|421
3J9W|1|BA|C|422
*
3J9W|1|BA|G|446
3J9W|1|BA|G|447
3J9W|1|BA|A|448
3J9W|1|BA|A|449
3J9W|1|BA|U|450
3J9W|1|BA|C|451
3J9W|1|BA|C|452
3J9W|1|BA|G|453
*
3J9W|1|BA|C|468
3J9W|1|BA|A|469
3J9W|1|BA|A|470
3J9W|1|BA|G|471

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein bL28