J4_3J9W_012

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACUG*CACAG*UGAC*GCAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9W_012 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1188

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

3J9W|1|BA|G|1801
3J9W|1|BA|A|1802
3J9W|1|BA|C|1803
3J9W|1|BA|U|1804
3J9W|1|BA|G|1805
*
3J9W|1|BA|C|1817
3J9W|1|BA|A|1818
3J9W|1|BA|C|1819
3J9W|1|BA|A|1820
3J9W|1|BA|G|1821
*
3J9W|1|BA|U|1856
3J9W|1|BA|G|1857
3J9W|1|BA|A|1858
3J9W|1|BA|C|1859
*
3J9W|1|BA|G|2004
3J9W|1|BA|C|2005
3J9W|1|BA|A|2006
3J9W|1|BA|A|2007
3J9W|1|BA|C|2008

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein uL2