J4_3J9W_014

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

3J9W|1|BA|A|2315, 3J9W|1|BA|A|2317

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9W_014 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1978

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

3J9W|1|BA|C|2314
3J9W|1|BA|A|2315
3J9W|1|BA|A|2316
3J9W|1|BA|A|2317
3J9W|1|BA|G|2318
*
3J9W|1|BA|U|2372
3J9W|1|BA|U|2373
3J9W|1|BA|G|2374
3J9W|1|BA|A|2375
3J9W|1|BA|C|2376
*
3J9W|1|BA|G|2399
3J9W|1|BA|G|2400
3J9W|1|BA|G|2401
*
3J9W|1|BA|C|2410
3J9W|1|BA|G|2411
3J9W|1|BA|G|2412

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein bL33

Chain B7

50S ribosomal protein bL35

Chain BZ

50S ribosomal protein bL27