J4_3J9Z_008

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9Z_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1036

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

3J9Z|1|LA|A|1772
3J9Z|1|LA|A|1773
3J9Z|1|LA|C|1774
3J9Z|1|LA|U|1775
3J9Z|1|LA|G|1776
*
3J9Z|1|LA|C|1788
3J9Z|1|LA|A|1789
3J9Z|1|LA|C|1790
3J9Z|1|LA|A|1791
3J9Z|1|LA|G|1792
*
3J9Z|1|LA|U|1827
3J9Z|1|LA|G|1828
3J9Z|1|LA|A|1829
3J9Z|1|LA|C|1830
*
3J9Z|1|LA|G|1975
3J9Z|1|LA|U|1976
3J9Z|1|LA|A|1977
3J9Z|1|LA|A|1978
3J9Z|1|LA|U|1979

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LN

50S ribosomal protein L2

Chain SA

Small subunit ribosomal RNA; SSU rRNA