J4_3JA1_004

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

3JA1|1|LA|G|1271, 3JA1|1|LA|A|1272, 3JA1|1|LA|U|1273, 3JA1|1|LA|A|1274, 3JA1|1|LA|A|1275, 3JA1|1|LA|C|1646, 3JA1|1|LA|U|1647

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JA1_004 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.2214

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

3JA1|1|LA|C|1270
3JA1|1|LA|G|1271
3JA1|1|LA|A|1272
3JA1|1|LA|U|1273
3JA1|1|LA|A|1274
3JA1|1|LA|A|1275
3JA1|1|LA|A|1276
*
3JA1|1|LA|U|1294
3JA1|1|LA|C|1295
*
3JA1|1|LA|G|1645
3JA1|1|LA|C|1646
3JA1|1|LA|U|1647
3JA1|1|LA|U|1648
*
3JA1|1|LA|A|2009
3JA1|1|LA|G|2010

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L3

50S ribosomal protein L32

Chain LP

50S ribosomal protein L17

Chain LU

50S ribosomal protein L22