3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
AAG*CGAAAG*CCAUAAACGAUG*UU
Length
23 nucleotides
Bulged bases
3JAN|1|S2|A|672, 3JAN|1|S2|A|1083
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_3JAN_009 not in the Motif Atlas
Homologous match to J4_8P9A_022
Geometric discrepancy: 0.1297
The information below is about J4_8P9A_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

3JAN|1|S2|A|671
3JAN|1|S2|A|672
3JAN|1|S2|G|673
*
3JAN|1|S2|C|1032
3JAN|1|S2|G|1033
3JAN|1|S2|A|1034
3JAN|1|S2|A|1035
3JAN|1|S2|A|1036
3JAN|1|S2|G|1037
*
3JAN|1|S2|C|1078
3JAN|1|S2|C|1079
3JAN|1|S2|A|1080
3JAN|1|S2|U|1081
3JAN|1|S2|A|1082
3JAN|1|S2|A|1083
3JAN|1|S2|A|1084
3JAN|1|S2|C|1085
3JAN|1|S2|G|1086
3JAN|1|S2|A|1087
3JAN|1|S2|U|1088
3JAN|1|S2|G|1089
*
3JAN|1|S2|U|1160
3JAN|1|S2|U|1161

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SL
Ribosomal protein uS17
Chain SN
Ribosomal protein uS15
Chain SO
Ribosomal protein uS11
Chain SW
Ribosomal protein uS8
Chain SX
Ribosomal protein uS12
Chain Sa
Ribosomal protein eS26
Chain n
Ribosomal protein eL41
Chain p
Ribosomal protein eL43

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2369 s