J4_3JBP_002
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- CAUUAAAAC*GAC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 3JBP|1|A|A|365
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JBP_002 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.1146
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
3JBP|1|A|C|101
3JBP|1|A|A|102
3JBP|1|A|U|103
3JBP|1|A|U|104
3JBP|1|A|A|105
3JBP|1|A|A|106
3JBP|1|A|A|107
3JBP|1|A|A|108
3JBP|1|A|C|109
*
3JBP|1|A|G|313
3JBP|1|A|A|314
3JBP|1|A|C|315
*
3JBP|1|A|G|363
3JBP|1|A|U|364
3JBP|1|A|A|365
3JBP|1|A|A|366
3JBP|1|A|C|367
*
3JBP|1|A|G|389
3JBP|1|A|G|390
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein eS4
- Chain L
- 40S ribosomal protein eS8
- Chain Q
- 40S ribosomal protein uS12
- Chain V
- 40S ribosomal protein uS17
Coloring options: