J4_3JCN_007

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JCN_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0726

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

3JCN|1|A|A|1772
3JCN|1|A|A|1773
3JCN|1|A|C|1774
3JCN|1|A|U|1775
3JCN|1|A|G|1776
*
3JCN|1|A|C|1788
3JCN|1|A|A|1789
3JCN|1|A|C|1790
3JCN|1|A|A|1791
3JCN|1|A|G|1792
*
3JCN|1|A|U|1827
3JCN|1|A|G|1828
3JCN|1|A|A|1829
3JCN|1|A|C|1830
*
3JCN|1|A|G|1975
3JCN|1|A|U|1976
3JCN|1|A|A|1977
3JCN|1|A|A|1978
3JCN|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2