J4_3PIO_009

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3PIO_009 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.2006

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

3PIO|1|X|C|2264
3PIO|1|X|A|2265
3PIO|1|X|A|2266
3PIO|1|X|A|2267
3PIO|1|X|G|2268
*
3PIO|1|X|U|2322
3PIO|1|X|U|2323
3PIO|1|X|G|2324
3PIO|1|X|A|2325
3PIO|1|X|C|2326
*
3PIO|1|X|G|2349
3PIO|1|X|G|2350
3PIO|1|X|G|2351
*
3PIO|1|X|C|2360
3PIO|1|X|G|2361
3PIO|1|X|G|2362

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain T

50S ribosomal protein L27