J4_4CSU_010

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

4CSU|1|B|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4CSU_010 not in the Motif Atlas

Homologous match to J4_5J7L_027

Geometric discrepancy: 0.171

The information below is about J4_5J7L_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

4CSU|1|B|C|2285
4CSU|1|B|G|2286
4CSU|1|B|A|2287
4CSU|1|B|A|2288
4CSU|1|B|G|2289
*
4CSU|1|B|U|2343
4CSU|1|B|U|2344
4CSU|1|B|G|2345
4CSU|1|B|A|2346
4CSU|1|B|C|2347
*
4CSU|1|B|G|2370
4CSU|1|B|G|2371
4CSU|1|B|U|2372
*
4CSU|1|B|A|2381
4CSU|1|B|G|2382
4CSU|1|B|G|2383

Current chains

Chain B

23S RRNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L33

Chain 7

50S RIBOSOMAL PROTEIN L35

Chain Y

50S RIBOSOMAL PROTEIN L27