J4_4D5Y_008
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 4D5Y|1|2|A|4194, 4D5Y|1|2|G|4289
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4D5Y_008 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.2578
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
4D5Y|1|2|C|4191
4D5Y|1|2|U|4192
4D5Y|1|2|A|4193
4D5Y|1|2|A|4194
4D5Y|1|2|G|4195
*
4D5Y|1|2|U|4249
4D5Y|1|2|U|4250
4D5Y|1|2|G|4251
4D5Y|1|2|A|4252
4D5Y|1|2|U|4253
*
4D5Y|1|2|A|4277
4D5Y|1|2|C|4278
4D5Y|1|2|C|4279
*
4D5Y|1|2|G|4288
4D5Y|1|2|G|4289
4D5Y|1|2|G|4290
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain D
- 60S RIBOSOMAL PROTEIN UL18
- Chain T
- 60S RIBOSOMAL PROTEIN EL21
- Chain b
- 60S RIBOSOMAL PROTEIN EL29
- Chain o
- 60S RIBOSOMAL PROTEIN EL44
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