J4_4D67_008
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 4D67|1|2|A|4194, 4D67|1|2|G|4289
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4D67_008 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.2578
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4D67|1|2|C|4191
4D67|1|2|U|4192
4D67|1|2|A|4193
4D67|1|2|A|4194
4D67|1|2|G|4195
*
4D67|1|2|U|4249
4D67|1|2|U|4250
4D67|1|2|G|4251
4D67|1|2|A|4252
4D67|1|2|U|4253
*
4D67|1|2|A|4277
4D67|1|2|C|4278
4D67|1|2|C|4279
*
4D67|1|2|G|4288
4D67|1|2|G|4289
4D67|1|2|G|4290
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain D
- 60S RIBOSOMAL PROTEIN L5
- Chain T
- 60S RIBOSOMAL PROTEIN L21
- Chain b
- 60S RIBOSOMAL PROTEIN L29
- Chain o
- 60S RIBOSOMAL PROTEIN L36A
Coloring options: