J4_4TUB_002

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4TUB|1|QA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4TUB_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0992

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4TUB|1|QA|G|142
4TUB|1|QA|A|143
4TUB|1|QA|G|144
*
4TUB|1|QA|C|178
4TUB|1|QA|A|179
4TUB|1|QA|U|180
4TUB|1|QA|G|181
4TUB|1|QA|U|182
4TUB|1|QA|G|183
*
4TUB|1|QA|C|194
4TUB|1|QA|A|195
4TUB|1|QA|A|196
4TUB|1|QA|A|197
4TUB|1|QA|G|198
*
4TUB|1|QA|C|219
4TUB|1|QA|G|220
4TUB|1|QA|C|221

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20