3D structure

PDB id
4TUB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GAG*CAUGUG*CAAAG*CGC
Length
17 nucleotides
Bulged bases
4TUB|1|QA|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4TUB_002 not in the Motif Atlas
Homologous match to J4_4LFB_002
Geometric discrepancy: 0.0992
The information below is about J4_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_88771.1
Basepair signature
cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
Number of instances in this motif group
1

Unit IDs

4TUB|1|QA|G|142
4TUB|1|QA|A|143
4TUB|1|QA|G|144
*
4TUB|1|QA|C|178
4TUB|1|QA|A|179
4TUB|1|QA|U|180
4TUB|1|QA|G|181
4TUB|1|QA|U|182
4TUB|1|QA|G|183
*
4TUB|1|QA|C|194
4TUB|1|QA|A|195
4TUB|1|QA|A|196
4TUB|1|QA|A|197
4TUB|1|QA|G|198
*
4TUB|1|QA|C|219
4TUB|1|QA|G|220
4TUB|1|QA|C|221

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QT
30S ribosomal protein S20

Coloring options:


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