J4_4UJC_008
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 4UJC|1|A2|A|4194, 4UJC|1|A2|G|4289
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4UJC_008 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.2578
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
4UJC|1|A2|C|4191
4UJC|1|A2|U|4192
4UJC|1|A2|A|4193
4UJC|1|A2|A|4194
4UJC|1|A2|G|4195
*
4UJC|1|A2|U|4249
4UJC|1|A2|U|4250
4UJC|1|A2|G|4251
4UJC|1|A2|A|4252
4UJC|1|A2|U|4253
*
4UJC|1|A2|A|4277
4UJC|1|A2|C|4278
4UJC|1|A2|C|4279
*
4UJC|1|A2|G|4288
4UJC|1|A2|G|4289
4UJC|1|A2|G|4290
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain BD
- 60S RIBOSOMAL PROTEIN L5
- Chain BT
- 60S RIBOSOMAL PROTEIN L21
- Chain Bb
- 60S RIBOSOMAL PROTEIN L29
- Chain Bo
- 60S RIBOSOMAL PROTEIN L36A
Coloring options: