J4_4UY8_008

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4UY8_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0535

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4UY8|1|A|A|1772
4UY8|1|A|A|1773
4UY8|1|A|C|1774
4UY8|1|A|U|1775
4UY8|1|A|G|1776
*
4UY8|1|A|C|1788
4UY8|1|A|A|1789
4UY8|1|A|C|1790
4UY8|1|A|A|1791
4UY8|1|A|G|1792
*
4UY8|1|A|U|1827
4UY8|1|A|G|1828
4UY8|1|A|A|1829
4UY8|1|A|C|1830
*
4UY8|1|A|G|1975
4UY8|1|A|U|1976
4UY8|1|A|A|1977
4UY8|1|A|A|1978
4UY8|1|A|U|1979

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2