3D structure

PDB id
4V4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.
Experimental method
X-RAY DIFFRACTION
Resolution
3.71 Å

Loop

Sequence
GAG*CAUGUG*CAAAG*CGC
Length
17 nucleotides
Bulged bases
4V4I|1|y|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V4I_014 not in the Motif Atlas
Homologous match to J4_4LFB_002
Geometric discrepancy: 0.2544
The information below is about J4_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_88771.1
Basepair signature
cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
Number of instances in this motif group
1

Unit IDs

4V4I|1|y|G|142
4V4I|1|y|A|143
4V4I|1|y|G|144
*
4V4I|1|y|C|178
4V4I|1|y|A|179
4V4I|1|y|U|180
4V4I|1|y|G|181
4V4I|1|y|U|182
4V4I|1|y|G|183
*
4V4I|1|y|C|194
4V4I|1|y|A|195
4V4I|1|y|A|196
4V4I|1|y|A|197
4V4I|1|y|G|198
*
4V4I|1|y|C|219
4V4I|1|y|G|220
4V4I|1|y|C|221

Current chains

Chain y
16S SMALL SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain u
30S ribosomal protein S20

Coloring options:


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