J4_4V4J_017
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GAG*CAUGUG*CAAAG*CGC
- Length
- 17 nucleotides
- Bulged bases
- 4V4J|1|y|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V4J_017 not in the Motif Atlas
- Homologous match to J4_4LFB_002
- Geometric discrepancy: 0.2378
- The information below is about J4_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_88771.1
- Basepair signature
- cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V4J|1|y|G|142
4V4J|1|y|A|143
4V4J|1|y|G|144
*
4V4J|1|y|C|178
4V4J|1|y|A|179
4V4J|1|y|U|180
4V4J|1|y|G|181
4V4J|1|y|U|182
4V4J|1|y|G|183
*
4V4J|1|y|C|194
4V4J|1|y|A|195
4V4J|1|y|A|196
4V4J|1|y|A|197
4V4J|1|y|G|198
*
4V4J|1|y|C|219
4V4J|1|y|G|220
4V4J|1|y|C|221
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain u
- 30S ribosomal protein S20
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