J4_4V4S_002

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V4S|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4S_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1853

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V4S|1|AA|G|142
4V4S|1|AA|A|143
4V4S|1|AA|G|144
*
4V4S|1|AA|C|178
4V4S|1|AA|A|179
4V4S|1|AA|U|180
4V4S|1|AA|G|181
4V4S|1|AA|U|182
4V4S|1|AA|G|183
*
4V4S|1|AA|C|194
4V4S|1|AA|A|195
4V4S|1|AA|A|196
4V4S|1|AA|A|197
4V4S|1|AA|G|198
*
4V4S|1|AA|C|219
4V4S|1|AA|G|220
4V4S|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20