J4_4V5M_014
3D structure
- PDB id
- 4V5M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.8 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 4V5M|1|BA|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V5M_014 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.2132
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V5M|1|BA|C|2285
4V5M|1|BA|A|2286
4V5M|1|BA|A|2287
4V5M|1|BA|A|2288
4V5M|1|BA|G|2289
*
4V5M|1|BA|C|2343
4V5M|1|BA|U|2344
4V5M|1|BA|G|2345
4V5M|1|BA|A|2346
4V5M|1|BA|C|2347
*
4V5M|1|BA|G|2370
4V5M|1|BA|G|2371
4V5M|1|BA|G|2372
*
4V5M|1|BA|C|2381
4V5M|1|BA|G|2382
4V5M|1|BA|G|2383
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B0
- 50S RIBOSOMAL PROTEIN L27
- Chain B6
- 50S RIBOSOMAL PROTEIN L33
- Chain B8
- 50S RIBOSOMAL PROTEIN L35
- Chain BS
- 50S RIBOSOMAL PROTEIN L18
Coloring options: