J4_4V5O_004
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- CAUUAAAAC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 4V5O|1|BA|A|350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V5O_004 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.161
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V5O|1|BA|C|95
4V5O|1|BA|A|96
4V5O|1|BA|U|97
4V5O|1|BA|U|98
4V5O|1|BA|A|99
4V5O|1|BA|A|100
4V5O|1|BA|A|101
4V5O|1|BA|A|102
4V5O|1|BA|C|103
*
4V5O|1|BA|G|298
4V5O|1|BA|C|299
4V5O|1|BA|C|300
*
4V5O|1|BA|G|348
4V5O|1|BA|U|349
4V5O|1|BA|A|350
4V5O|1|BA|A|351
4V5O|1|BA|C|352
*
4V5O|1|BA|G|374
4V5O|1|BA|G|375
Current chains
- Chain BA
- 18S RRNA
Nearby chains
- Chain B2
- 40S RIBOSOMAL PROTEIN S8
- Chain BL
- 40S RIBOSOMAL PROTEIN S12
- Chain BQ
- RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN
- Chain BW
- 40S RIBOSOMAL PROTEIN S4
Coloring options: