J4_4V61_010

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V61_010 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.143

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V61|1|BA|G|1782
4V61|1|BA|A|1783
4V61|1|BA|C|1784
4V61|1|BA|U|1785
4V61|1|BA|G|1786
*
4V61|1|BA|C|1798
4V61|1|BA|A|1799
4V61|1|BA|C|1800
4V61|1|BA|A|1801
4V61|1|BA|G|1802
*
4V61|1|BA|U|1837
4V61|1|BA|G|1838
4V61|1|BA|A|1839
4V61|1|BA|C|1840
*
4V61|1|BA|G|1989
4V61|1|BA|U|1990
4V61|1|BA|A|1991
4V61|1|BA|A|1992
4V61|1|BA|C|1993

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

Ribosomal Protein L2