J4_4V68_002

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V68|1|AA|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V68_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1109

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V68|1|AA|G|142
4V68|1|AA|A|143
4V68|1|AA|G|144
*
4V68|1|AA|C|178
4V68|1|AA|A|179
4V68|1|AA|U|180
4V68|1|AA|G|181
4V68|1|AA|U|182
4V68|1|AA|G|183
*
4V68|1|AA|C|194
4V68|1|AA|A|195
4V68|1|AA|A|196
4V68|1|AA|A|197
4V68|1|AA|G|198
*
4V68|1|AA|C|219
4V68|1|AA|G|220
4V68|1|AA|C|221

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20