J4_4V68_007

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V68|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V68_007 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1524

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V68|1|BA|C|268
4V68|1|BA|U|269
*
4V68|1|BA|G|370
4V68|1|BA|A|371
4V68|1|BA|G|372
4V68|1|BA|U|373
4V68|1|BA|A|374
4V68|1|BA|C|375
*
4V68|1|BA|G|399
4V68|1|BA|G|400
4V68|1|BA|A|401
4V68|1|BA|A|402
4V68|1|BA|U|403
4V68|1|BA|C|404
4V68|1|BA|U|405
4V68|1|BA|G|406
*
4V68|1|BA|U|421
4V68|1|BA|A|422
4V68|1|BA|A|423
4V68|1|BA|G|424

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BI

50S ribosomal protein L9