J4_4V68_011

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4V68|1|BA|U|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V68_011 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V68|1|BA|G|1310
4V68|1|BA|G|1311
4V68|1|BA|U|1312
4V68|1|BA|U|1313
4V68|1|BA|C|1314
*
4V68|1|BA|G|1338
4V68|1|BA|G|1339
4V68|1|BA|U|1340
4V68|1|BA|U|1341
4V68|1|BA|A|1342
4V68|1|BA|G|1343
*
4V68|1|BA|C|1404
4V68|1|BA|U|1405
*
4V68|1|BA|A|1597
4V68|1|BA|C|1598
4V68|1|BA|C|1599
4V68|1|BA|C|1600
4V68|1|BA|G|1601
4V68|1|BA|U|1602
4V68|1|BA|A|1603
4V68|1|BA|C|1604

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23