J4_4V68_014

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V68_014 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0597

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V68|1|BA|G|1772
4V68|1|BA|A|1773
4V68|1|BA|C|1774
4V68|1|BA|U|1775
4V68|1|BA|G|1776
*
4V68|1|BA|C|1788
4V68|1|BA|A|1789
4V68|1|BA|C|1790
4V68|1|BA|A|1791
4V68|1|BA|G|1792
*
4V68|1|BA|C|1827
4V68|1|BA|G|1828
4V68|1|BA|A|1829
4V68|1|BA|C|1830
*
4V68|1|BA|G|1975
4V68|1|BA|U|1976
4V68|1|BA|A|1977
4V68|1|BA|A|1978
4V68|1|BA|C|1979

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L2