J4_4V6I_005
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- AUAG*UGG*CAGAUC*GU
- Length
- 15 nucleotides
- Bulged bases
- 4V6I|1|CB|U|8, 4V6I|1|CB|A|46, 4V6I|1|CB|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6I_005 not in the Motif Atlas
- Homologous match to J4_5J8B_014
- Geometric discrepancy: 0.32
- The information below is about J4_5J8B_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_36296.2
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V6I|1|CB|A|7
4V6I|1|CB|U|8
4V6I|1|CB|A|9
4V6I|1|CB|G|10
*
4V6I|1|CB|U|25
4V6I|1|CB|G|26
4V6I|1|CB|G|27
*
4V6I|1|CB|C|43
4V6I|1|CB|A|44
4V6I|1|CB|G|45
4V6I|1|CB|A|46
4V6I|1|CB|U|47
4V6I|1|CB|C|48
*
4V6I|1|CB|G|64
4V6I|1|CB|U|65
Current chains
- Chain CB
- P-SITE TRNA ASP
Nearby chains
- Chain BI
- 60S ribosomal protein rpL10 (L10e)
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: